I haven't tried it yet myself, but you should be able to load the CSV into a MySQL database. You can then use the stream database operator to avoid size limitations. Here is the description from RapidMiner:
In contrast to the Read Database operator, which loads the data into the main memory, the Stream Database operator keeps the data in the database and performs the data reading in batches. This allows RapidMiner to access data sets of arbitrary sizes without any size restrictions.